PUBLICATIONS

Under Review

Yin Cao, Bao Wang, Kelin Xia and Guo-Wei Wei, “Finite volume formulation of the MIB method for elliptic interface problems”, J. Comput. Phys., submitted, (2015) arXiv

Published/Accepted

Duc D Nguyen, Kelin Xia and Guo-Wei Wei, “Generalized flexibility-rigidity index”, Journal of Chemical Physics, 144, 234106 (2016) Full Text

Kristopher Opron, Kelin Xia, Zachary F. Burton and Guo-Wei Wei, “Flexibility-rigidity index for protein-nucleic acid flexibility and fluctuation analysis”, Journal of Computational Chemistry, 37, 1283-1295, (2016)

Zixuan Cang, Lin Mu, Kedi Wu, Kristopher Opron, Kelin Xia and Guo-Wei Wei, “A topological approach to protein classification”, Molecular Based Mathematical Biology, 3, 140-162 (2015) Full Text
Kelin Xia, Kristopher Opron and Guo-Wei Wei, “Multiscale Gaussian network model (mGNM) and multiscale anisotropic network model (mANM)”, Journal of Chemical Physics, 143, 204106(2015) Full Text

Kelin Xia, Zhixiong Zhao and Guo-Wei Wei, “Multiresolution persistent homology for excessively large biomolecular datasets”, Journal of Chemical Physics, 143, 134103(2015) Full Text

Kelin Xia and Guo-Wei Wei, “Multiresolution topological simplification”, Journal of Computational Biology, 22(9), 1-5 (2015)

Kelin Xia and Guo-Wei Wei, “Multidimensional persistence in biomolecular data”, Journal of Computational Chemistry, 36, 1502-1520(2015)

Kelin Xia and Guo-Wei Wei, “Persistent homology for cryo-EM data analysis”, International Journal for Numerical Methods in Biomedical Engineering, 31(8), e02719(2015)

Jinkyoung Park, Kelin Xia and Guo-Wei Wei, “Atomic scale design and three-dimensional simulation of ionic diffusive nanofluidic channels”, Microfluidics and Nanofluidics, 19(3), 665-692(2015)

Kristopher Opron, Kelin Xia and Guo-Wei Wei, “Communication: Capturing protein multiscale thermal fluctuations”, Journal of Chemical Physics, 142, 211101(2015) Full Text

Bao Wang, Kelin Xia and Guo-Wei Wei, “Second order method for solving 3D elasticity equations with complex interfaces”, J. Comput. Phys., 294, 405-438(2015)

Kelin Xia, Xin Feng, Yiying Tong and Guo-Wei Wei, “Persistent homology for the quantitative prediction of fullerene stability”, Journal of Computational Chemistry, 36, 408-422(2015)

Bao Wang, Kelin Xia and Guo-Wei Wei, “Matched interface and boundary method for elasticity interface problems”, Journal of Computational and Applied Mathematics, 285, 203-225(2015)

Kelin Xia and Guo-Wei Wei, “A Galerkin formulation of the MIB method for three dimensional elliptic interface problems”, Computers and Mathematics with Applications, 68, 719-745(2014)

Kelin Xia and Guo-Wei Wei, “Persistent homology analysis of protein structure, flexibility and folding”, International Journal for Numerical Methods in Biomedical Engineering, 30(8):814-844(2014)

Kristopher Opron, Kelin Xia and Guo-Wei Wei, “Fast and anisotropic flexibility-rigidity index for protein flexibility and fluctuation analysis”, J. Chem. Phys., 140, 234105(2014) Full Text

Kelin Xia, Meng Zhan and Guo-Wei Wei, “MIB Galerkin method for elliptic interface problem”, Journal of Computational and Applied Mathematics, 272, 195-220(2014)

Kelin Xia and Guo-Wei Wei, “Molecular nonlinear dynamics and protein thermal uncertainty quantification”, Chaos: 24, 013103(2014) Full Text

Kelin Xia and Guo-Wei Wei, “Stochastic model for protein flexibility analysis”, Physical Review E, 88, 062709(2013) Full Text

Kelin Xia, Kristopher Opron and Guo-Wei Wei, “Multiscale multiphysics and multidomain models-Flexibility and rigidity”, Journal of Chemical Physics, 139, 194109(2013) Full Text

Kelin Xia, Xin Feng, Zhan Chen, Yiying Tong and Guo-Wei Wei, “Multiscale geometric modeling of macromolecules I: Cartesian representation”, J. Comput. Phys., 257, 912-936(2014)

Xin Feng, Kelin Xia, Zhan Chen, Yiying Tong and Guo-Wei Wei, “Multiscale geometric modeling of macromolecules II: Lagrangian representation”, Journal of Computational Chemistry, 34, 2100-2120(2013)

Xin Feng, Kelin Xia, Yiying Tong and Guo-Wei Wei, “Geometric modeling of subcellular structures, organelles,and multiprotein complexes”, International Journal for Numerical Methods in Biomedical Engineering, 28(12), 1198-1223(2012)

Guo-Wei Wei, Qiong Zheng, Zhan Chen and Kelin Xia, “Variational multiscale models for charge transport”, SIAM Review, 54(4), 699-754(2012) Full Text

Kelin Xia, Meng Zhan, Decheng Wan and Guo-Wei Wei, “Adaptively deformed mesh based interface method for ellipticequations with discontinuous coefficients”, J. Comput. Phys., 231(4), 1440-1461(2012)

Kelin Xia, Meng Zhan and Guo-Wei Wei, “MIB method for elliptic equations with multimaterial interfaces”, J. Comput. Phys., 230(12), 4588-4615(2011)

Ming Yi, Kelin Xia and Meng Zhan, “Theoretical study for regulatory property of scaffold protein on MAPK cascade: a qualitative modeling”, Biophysical Chemistry, 147(3), 130-139(2010)

Qi Zhao, Ming Yi, Kelin Xia and Meng Zhan, “Information propagation from IP3 to target protein: A combined model for encoding and decoding of Ca2+ signal”, Physica A, 388, 4105-4114(2009)

 

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